Stanford Home
Ovarian Kaleidoscope Database (OKdb)

Home

History

Transgenic Mouse Models

INFORGRAPHICS

Search
Submit
Update
Chroms
Browse
Admin

Hsueh lab

HPMR

Visits
since 01/2001:
176557

RAD54 homolog B OKDB#: 4908
 Symbols: RAD54B Species: human
 Synonyms: RDH54  Locus: 8q22.1 in Homo sapiens


For retrieval of Nucleotide and Amino Acid sequences please go to: OMIM Entrez Gene
Mammalian Reproductive Genetics   Endometrium Database Resource   Orthologous Genes   UCSC Genome Browser   GEO Profiles new!   Amazonia (transcriptome data) new!

R-L INTERACTIONS   MGI

DNA Microarrays
SHOW DATA ...
link to BioGPS
General Comment NCBI Summary: The protein encoded by this gene belongs to the DEAD-like helicase superfamily. It shares similarity with Saccharomyces cerevisiae RAD54 and RDH54, both of which are involved in homologous recombination and repair of DNA. This protein binds to double-stranded DNA, and displays ATPase activity in the presence of DNA. This gene is highly expressed in testis and spleen, which suggests active roles in meiotic and mitotic recombination. Homozygous mutations of this gene were observed in primary lymphoma and colon cancer. [provided by RefSeq, Jul 2008]
General function Tumor suppressor, DNA repair, Enzyme
Comment
Cellular localization Nuclear
Comment GWAS123
Ovarian function
Comment
Expression regulated by
Comment
Ovarian localization
Comment
Follicle stages
Comment
Phenotypes PCO (polycystic ovarian syndrome)
Mutations 1 mutations

Species: human
Mutation name: None
type: naturally occurring
fertility: subfertile
Comment: Replication study of RAD54B and GREB1 polymorphisms and risk of PCOS in Han Chinese. Wang Z 2013 et al. A previous genome-wide association study (GWAS) of polycystic ovary syndrome (PCOS) identified several susceptibility loci, with P-values about 10(-5). In the present study, an independent cohort was used for a replication study to evaluate the association of RAD54B and GREB1 with polycystic ovary syndrome (PCOS) in the Han Chinese population. Four single-nucleotide polymorphisms (SNP), rs2930961 (RAD54B), rs12470971, rs11686574 and rs6740248 (GREB1), were genotyped in 1124 PCOS patients and 1067 healthy controls from the Han Chinese population. Real-time quantitative PCR by TaqMan-MGB probe assay was applied for genotyping. The allele and genotype frequencies of these four SNP were not significantly different in the replication cohort. However, the minor allele frequency of rs2930961 was significantly different in hyperandrogenism of PCOS. After meta-analysis by combining the results of these two studies, there was a non-significant trend for the association of rs2930961 (RAD54B) with PCOS. RAD54B and GREB1 gene polymorphisms may not be associated with PCOS in the Han Chinese population. Nevertheless, RAD54B may contribute to hyperandrogenism in PCOS patients. Polycystic ovary syndrome (PCOS) is a heterogeneous endocrinopathy. Contribution of different genetic factors to the development of the disease is now widely accepted. To discover new candidate genes, based on a previously published genome-wide association study (GWAS), a replication study was conducted. The genes for RAD54 homologue B (RAD54B) and growth regulation by oestrogen in breast cancer 1 (GREB1), which are important for meiotic and mitotic recombination (RAD54B) and hormone signal target (GREB1), were found to be associated with PCOS in the previous GWAS. However, this association was not confirmed in the current replication study. Genotype-phenotype analysis shows RAD54B is associated with hyperandrogenism of PCOS. This finding provides new insight for GWAS data related to PCOS. /////////////////////////

Genomic Region show genomic region
Phenotypes and GWAS show phenotypes and GWAS
Links
OMIM (Online Mendelian Inheritance in Man: an excellent source of general gene description and genetic information.)
OMIM \ Animal Model
KEGG Pathways
Recent Publications
None
Search for Antibody


created: July 24, 2013, 9:46 a.m. by: hsueh   email:
home page:
last update: April 4, 2020, 3:12 p.m. by: hsueh    email:



Use the back button of your browser to return to the Gene List.

Click here to return to gene search form