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SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 OKDB#: 5881
 Symbols: SMARCA2 Species: human
 Synonyms: BRM, SNF2, SWI2, hBRM, NCBRS, Sth1p, BAF190, SNF2L2, SNF2LA, hSNF2a  Locus: 9p24.3 in Homo sapiens


For retrieval of Nucleotide and Amino Acid sequences please go to: OMIM Entrez Gene
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General Comment NCBI Summary: The protein encoded by this gene is a member of the SWI/SNF family of proteins and is highly similar to the brahma protein of Drosophila. Members of this family have helicase and ATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The encoded protein is part of the large ATP-dependent chromatin remodeling complex SNF/SWI, which is required for transcriptional activation of genes normally repressed by chromatin. Alternatively spliced transcript variants encoding different isoforms have been found for this gene, which contains a trinucleotide repeat (CAG) length polymorphism. [provided by RefSeq, Jan 2014]
General function Intracellular signaling cascade, Enzyme
Comment
Cellular localization
Comment
Ovarian function Follicle atresia
Comment
Expression regulated by
Comment
Ovarian localization Granulosa
Comment
Follicle stages
Comment
Phenotypes
Mutations 1 mutations

Species: porcine
Mutation name:
type: naturally occurring
fertility: fertile
Comment: SMARCA2 is regulated by NORFA/miR-29c, a novel pathway related to female fertility, controls granulosa cell apoptosis. Du X et al. (2020) SMARCA2, an evolutionarily conserved catalytic ATPase subunit of the SWI/SNF complexes, has been implicated in development and diseases. However, its role in mammalian ovarian function and female fertility is unknown. Here, we identified and characterized the 3'-UTR of porcine SMARCA2 gene, and a novel adenylate number variation was identified. Notably, this mutation is significantly associated with sow litter size traits and SMARCA2 levels by influencing the stability of SMARCA2 mRNA in ovarian granulosa cells (GCs). Immunohistochemistry and functional analysis show that SMARCA2 is involved in the regulation of follicular atresia by inhibiting GC apoptosis. In addition, miR-29c, a pro-apoptotic factor, was identified as a functional miRNA that targets SMARCA2 in GCs, and mediated NORFA/SMAD4 axis regulation of SMARCA2 expression. Although a potential miR-29c responsive element was identified within NORFA, NORFA negatively regulates miR-29c expression not through being a competing endogeneous RNA. In conclusion, our findings demonstrate that SMARCA2 is a candidate gene for sow litter size traits as it regulates follicular atresia and GC apoptosis; additionally, we have defined a novel candidate pathway for sow fertility, NORFA/TGFBR2/SMAD4/miR-29c/SMARCA2 pathway.//////////////////

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Links
OMIM (Online Mendelian Inheritance in Man: an excellent source of general gene description and genetic information.)
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created: Nov. 11, 2020, 9:07 p.m. by: system   email:
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last update: Nov. 11, 2020, 9:12 p.m. by: hsueh    email:



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